Class: JournalArticle
A report that is published in a journal.
erDiagram
JournalArticle {
string doi
string title
W3CISO8601 date_published
stringList curation_comments
string display_name
uriorcurie pid
uriorcurieList broad_mappings
uriorcurieList close_mappings
string description
uriorcurieList exact_mappings
uriorcurieList narrow_mappings
uriorcurieList related_mappings
NodeUriOrCurie schema_type
}
Statement {
}
Property {
uriorcurie pid
uriorcurieList broad_mappings
uriorcurieList close_mappings
string description
uriorcurieList exact_mappings
uriorcurieList narrow_mappings
uriorcurieList related_mappings
NodeUriOrCurie schema_type
}
Thing {
uriorcurie pid
uriorcurieList broad_mappings
uriorcurieList close_mappings
string description
uriorcurieList exact_mappings
uriorcurieList narrow_mappings
uriorcurieList related_mappings
NodeUriOrCurie schema_type
}
AttributeSpecification {
uriorcurieList broad_mappings
uriorcurieList close_mappings
string description
uriorcurieList exact_mappings
uriorcurieList narrow_mappings
uriorcurieList related_mappings
NodeUriOrCurie schema_type
uriorcurie range
string value
}
Annotation {
string annotation_value
}
Identifier {
uriorcurie creator
string notation
NodeUriOrCurie schema_type
}
Dataset {
string title
string short_name
string acknowledgements
stringList curation_comments
string display_name
uriorcurie pid
uriorcurieList broad_mappings
uriorcurieList close_mappings
string description
uriorcurieList exact_mappings
uriorcurieList narrow_mappings
uriorcurieList related_mappings
NodeUriOrCurie schema_type
}
Project {
string title
string short_name
W3CISO8601 date_started
W3CISO8601 date_ended
string description
stringList curation_comments
string display_name
uriorcurie pid
uriorcurieList broad_mappings
uriorcurieList close_mappings
uriorcurieList exact_mappings
uriorcurieList narrow_mappings
uriorcurieList related_mappings
NodeUriOrCurie schema_type
}
Person {
stringList additional_names
string family_name
string given_name
string honorific_name_prefix
string honorific_name_suffix
EmailAddressList emails
string orcid
stringList curation_comments
string display_name
uriorcurie pid
uriorcurieList broad_mappings
uriorcurieList close_mappings
string description
uriorcurieList exact_mappings
uriorcurieList narrow_mappings
uriorcurieList related_mappings
NodeUriOrCurie schema_type
}
Journal {
string issn
string title
string short_name
stringList curation_comments
string display_name
uriorcurie pid
uriorcurieList broad_mappings
uriorcurieList close_mappings
string description
uriorcurieList exact_mappings
uriorcurieList narrow_mappings
uriorcurieList related_mappings
NodeUriOrCurie schema_type
}
JournalArticle ||--}o Person : "authors"
JournalArticle ||--|o Journal : "journal"
JournalArticle ||--}o Project : "contributing_projects"
JournalArticle ||--}o Dataset : "employed_datasets"
JournalArticle ||--}o Identifier : "identifiers"
JournalArticle ||--}o Thing : "relations"
JournalArticle ||--}o Annotation : "annotations"
JournalArticle ||--}o AttributeSpecification : "attributes"
JournalArticle ||--}o Statement : "characterized_by"
Statement ||--|| Thing : "object"
Statement ||--|| Property : "predicate"
Property ||--}o Thing : "relations"
Property ||--}o Annotation : "annotations"
Property ||--}o AttributeSpecification : "attributes"
Property ||--}o Statement : "characterized_by"
Thing ||--}o Thing : "relations"
Thing ||--}o Annotation : "annotations"
Thing ||--}o AttributeSpecification : "attributes"
Thing ||--}o Statement : "characterized_by"
AttributeSpecification ||--|| Property : "predicate"
AttributeSpecification ||--}o Annotation : "annotations"
AttributeSpecification ||--}o AttributeSpecification : "attributes"
AttributeSpecification ||--}o Statement : "characterized_by"
Annotation ||--|o Thing : "annotation_tag"
Dataset ||--}o Person : "authors"
Dataset ||--}o Project : "contributing_projects"
Dataset ||--}o Identifier : "identifiers"
Dataset ||--}o Thing : "relations"
Dataset ||--}o Annotation : "annotations"
Dataset ||--}o AttributeSpecification : "attributes"
Dataset ||--}o Statement : "characterized_by"
Project ||--}o Person : "leaders"
Project ||--}o Person : "collaborators"
Project ||--}o Organization : "partner_organizations"
Project ||--}o Grant : "funding"
Project ||--|o Project : "parent_project"
Project ||--}o Dataset : "employed_datasets"
Project ||--}o Identifier : "identifiers"
Project ||--}o Thing : "relations"
Project ||--}o Annotation : "annotations"
Project ||--}o AttributeSpecification : "attributes"
Project ||--}o Statement : "characterized_by"
Person ||--}o Organization : "member_of"
Person ||--}o Room : "offices"
Person ||--}o Identifier : "identifiers"
Person ||--}o Thing : "relations"
Person ||--}o Annotation : "annotations"
Person ||--}o AttributeSpecification : "attributes"
Person ||--}o Statement : "characterized_by"
Journal ||--}o Identifier : "identifiers"
Journal ||--}o Thing : "relations"
Journal ||--}o Annotation : "annotations"
Journal ||--}o AttributeSpecification : "attributes"
Journal ||--}o Statement : "characterized_by"
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Inheritance
- Thing [ ThingMixin]
- JournalArticle [ CurationAid]
Slots
Name | Cardinality and Range | Description | Inheritance |
---|---|---|---|
doi | 0..1 recommended String |
Associated Digital Object Identifier (DOI; ISO 26324; see https://doi | direct |
title | 1 String |
A summarily description of the subject | direct |
authors | * Person |
People that contributed to a document in the author role | direct |
journal | 0..1 Journal |
Journal a document was published in | direct |
date_published | 0..1 W3CISO8601 |
Timepoint at which the subject was (last) published | direct |
contributing_projects | * Project |
Projects that have contributed to the subject | direct |
employed_datasets | * Dataset |
Dataset(s) that informed the subject | direct |
curation_comments | * String |
A comment about a metadata record either providing additional information for... | CurationAid |
display_name | 0..1 recommended String |
Name to shown when the record is displayed as an item | CurationAid |
identifiers | * Identifier |
An unambiguous reference to the subject within a given context | CurationAid |
pid | 1 Uriorcurie |
Persistent and globally unique identifier of a Thing |
Thing |
relations | * Thing |
Declares an unqualified relation of the subject Thing to another Thing |
Thing |
annotations | * Annotation |
A record of properties of the metadata record on a subject, a collection of t... | ThingMixin |
broad_mappings | * Uriorcurie |
A list of terms from different schemas or terminology systems that have broad... | ThingMixin |
close_mappings | * Uriorcurie |
A list of terms from different schemas or terminology systems that have close... | ThingMixin |
description | 0..1 String |
A free-text account of the subject | ThingMixin |
exact_mappings | * Uriorcurie |
A list of terms from different schemas or terminology systems that have ident... | ThingMixin |
attributes | * AttributeSpecification |
Declares a relation that associates a Thing (or another attribute) with an ... |
ThingMixin |
characterized_by | * Statement |
Qualifies relationships between a subject Thing and an object Thing with ... |
ThingMixin |
narrow_mappings | * Uriorcurie |
A list of terms from different schemas or terminology systems that have narro... | ThingMixin |
related_mappings | * Uriorcurie |
A list of terms from different schemas or terminology systems that have relat... | ThingMixin |
schema_type | 0..1 NodeUriOrCurie |
State that the subject is an instance of a particular schema class | ThingMixin |
Identifier and Mapping Information
Schema Source
- from schema: https://concepts.inm7.de/s/simpleinput/unreleased
Mappings
Mapping Type | Mapped Value |
---|---|
self | inm7si:JournalArticle |
native | inm7si:JournalArticle |
Examples
Example: JournalArticle-typical
pid: https://doi.org/10.1038/s41597-022-01163-2
doi: 10.1038/s41597-022-01163-2
title: "FAIRly big: A framework for computationally reproducible processing of large-scale data"
authors:
- orcid:0000-0003-2917-3450
- orcid:0000-0003-2213-7465
- orcid:0000-0003-0820-2662
- orcid:0000-0001-7163-3110
- orcid:0000-0002-8402-6173
- orcid:0000-0001-7628-0801
- orcid:0000-0001-6363-2759
- orcid:0000-0001-6398-6370
date_published: "2022"
LinkML Source
Direct
name: JournalArticle
description: A report that is published in a journal.
from_schema: https://concepts.inm7.de/s/simpleinput/unreleased
is_a: Thing
mixins:
- CurationAid
slots:
- doi
- title
- authors
- journal
- date_published
- contributing_projects
- employed_datasets
slot_usage:
title:
name: title
annotations:
sh:name:
tag: sh:name
value: Title
sh:group:
tag: sh:group
value: inm7si:JournalArticlePropertyGroup
sh:order:
tag: sh:order
value: 1
required: true
doi:
name: doi
annotations:
sh:name:
tag: sh:name
value: Digital Object Identifier
sh:group:
tag: sh:group
value: inm7si:JournalArticlePropertyGroup
sh:order:
tag: sh:order
value: 2
recommended: true
authors:
name: authors
annotations:
sh:name:
tag: sh:name
value: Author(s)
sh:group:
tag: sh:group
value: inm7si:JournalArticlePropertyGroup
sh:order:
tag: sh:order
value: 3
journal:
name: journal
annotations:
sh:name:
tag: sh:name
value: Journal
sh:group:
tag: sh:group
value: inm7si:JournalArticlePropertyGroup
sh:order:
tag: sh:order
value: 4
date_published:
name: date_published
annotations:
sh:name:
tag: sh:name
value: Date published
sh:group:
tag: sh:group
value: inm7si:JournalArticlePropertyGroup
sh:order:
tag: sh:order
value: 5
contributing_projects:
name: contributing_projects
annotations:
sh:name:
tag: sh:name
value: Associated project(s)
sh:group:
tag: sh:group
value: inm7si:JournalArticlePropertyGroup
sh:order:
tag: sh:order
value: 6
employed_datasets:
name: employed_datasets
annotations:
sh:name:
tag: sh:name
value: Employed dataset(s)
sh:group:
tag: sh:group
value: inm7si:JournalArticlePropertyGroup
sh:order:
tag: sh:order
value: 7
class_uri: inm7si:JournalArticle
Induced
name: JournalArticle
description: A report that is published in a journal.
from_schema: https://concepts.inm7.de/s/simpleinput/unreleased
is_a: Thing
mixins:
- CurationAid
slot_usage:
title:
name: title
annotations:
sh:name:
tag: sh:name
value: Title
sh:group:
tag: sh:group
value: inm7si:JournalArticlePropertyGroup
sh:order:
tag: sh:order
value: 1
required: true
doi:
name: doi
annotations:
sh:name:
tag: sh:name
value: Digital Object Identifier
sh:group:
tag: sh:group
value: inm7si:JournalArticlePropertyGroup
sh:order:
tag: sh:order
value: 2
recommended: true
authors:
name: authors
annotations:
sh:name:
tag: sh:name
value: Author(s)
sh:group:
tag: sh:group
value: inm7si:JournalArticlePropertyGroup
sh:order:
tag: sh:order
value: 3
journal:
name: journal
annotations:
sh:name:
tag: sh:name
value: Journal
sh:group:
tag: sh:group
value: inm7si:JournalArticlePropertyGroup
sh:order:
tag: sh:order
value: 4
date_published:
name: date_published
annotations:
sh:name:
tag: sh:name
value: Date published
sh:group:
tag: sh:group
value: inm7si:JournalArticlePropertyGroup
sh:order:
tag: sh:order
value: 5
contributing_projects:
name: contributing_projects
annotations:
sh:name:
tag: sh:name
value: Associated project(s)
sh:group:
tag: sh:group
value: inm7si:JournalArticlePropertyGroup
sh:order:
tag: sh:order
value: 6
employed_datasets:
name: employed_datasets
annotations:
sh:name:
tag: sh:name
value: Employed dataset(s)
sh:group:
tag: sh:group
value: inm7si:JournalArticlePropertyGroup
sh:order:
tag: sh:order
value: 7
attributes:
doi:
name: doi
annotations:
sh:name:
tag: sh:name
value: Digital Object Identifier
sh:group:
tag: sh:group
value: inm7si:JournalArticlePropertyGroup
sh:order:
tag: sh:order
value: 2
description: Associated Digital Object Identifier (DOI; ISO 26324; see https://doi.org). The
value must be just the DOI without the URL project. So just `10.1038/s41597-022-01163-2`
and not `https://doi.org/10.1038/s41597-022-01163-2`.
from_schema: https://concepts.inm7.de/s/simpleinput/unreleased
rank: 1000
alias: doi
owner: JournalArticle
domain_of:
- JournalArticle
range: string
recommended: true
title:
name: title
annotations:
sh:name:
tag: sh:name
value: Title
sh:group:
tag: sh:group
value: inm7si:JournalArticlePropertyGroup
sh:order:
tag: sh:order
value: 1
description: A summarily description of the subject. It is closely related to
a `name`, but often less compact and more descriptive. Typically used for documents.
from_schema: https://concepts.inm7.de/s/simpleinput/unreleased
rank: 1000
alias: title
owner: JournalArticle
domain_of:
- Accolade
- Dataset
- Deliverable
- Grant
- Project
- Journal
- JournalArticle
range: string
required: true
authors:
name: authors
annotations:
sh:name:
tag: sh:name
value: Author(s)
sh:group:
tag: sh:group
value: inm7si:JournalArticlePropertyGroup
sh:order:
tag: sh:order
value: 3
description: People that contributed to a document in the author role.
from_schema: https://concepts.inm7.de/s/simpleinput/unreleased
rank: 1000
alias: authors
owner: JournalArticle
domain_of:
- Dataset
- JournalArticle
range: Person
multivalued: true
journal:
name: journal
annotations:
sh:name:
tag: sh:name
value: Journal
sh:group:
tag: sh:group
value: inm7si:JournalArticlePropertyGroup
sh:order:
tag: sh:order
value: 4
description: Journal a document was published in.
from_schema: https://concepts.inm7.de/s/simpleinput/unreleased
rank: 1000
alias: journal
owner: JournalArticle
domain_of:
- JournalArticle
range: Journal
date_published:
name: date_published
annotations:
sh:name:
tag: sh:name
value: Date published
sh:group:
tag: sh:group
value: inm7si:JournalArticlePropertyGroup
sh:order:
tag: sh:order
value: 5
description: Timepoint at which the subject was (last) published.
from_schema: https://concepts.inm7.de/s/simpleinput/unreleased
rank: 1000
alias: date_published
owner: JournalArticle
domain_of:
- JournalArticle
range: W3CISO8601
contributing_projects:
name: contributing_projects
annotations:
sh:name:
tag: sh:name
value: Associated project(s)
sh:group:
tag: sh:group
value: inm7si:JournalArticlePropertyGroup
sh:order:
tag: sh:order
value: 6
description: Projects that have contributed to the subject.
from_schema: https://concepts.inm7.de/s/simpleinput/unreleased
rank: 1000
alias: contributing_projects
owner: JournalArticle
domain_of:
- Dataset
- JournalArticle
range: Project
multivalued: true
employed_datasets:
name: employed_datasets
annotations:
sh:name:
tag: sh:name
value: Employed dataset(s)
sh:group:
tag: sh:group
value: inm7si:JournalArticlePropertyGroup
sh:order:
tag: sh:order
value: 7
description: Dataset(s) that informed the subject.
from_schema: https://concepts.inm7.de/s/simpleinput/unreleased
rank: 1000
alias: employed_datasets
owner: JournalArticle
domain_of:
- Project
- JournalArticle
range: Dataset
multivalued: true
curation_comments:
name: curation_comments
annotations:
sh:name:
tag: sh:name
value: Comments
sh:group:
tag: sh:group
value: inm7si:CurationAidPropertyGroup
sh:order:
tag: sh:order
value: 2
dash:singleLine:
tag: dash:singleLine
value: false
description: A comment about a metadata record either providing additional information
for a record curation, or leaving a comment after curation occurred. This can
be used to include information that is deemed relevant, but could not be expressed
in the provided fields.
from_schema: https://concepts.inm7.de/s/simpleinput/unreleased
rank: 1000
alias: curation_comments
owner: JournalArticle
domain_of:
- CurationAid
range: string
multivalued: true
display_name:
name: display_name
annotations:
sh:name:
tag: sh:name
value: Display name
sh:group:
tag: sh:group
value: inm7si:CurationAidPropertyGroup
sh:order:
tag: sh:order
value: 1
description: Name to shown when the record is displayed as an item.
from_schema: https://concepts.inm7.de/s/simpleinput/unreleased
rank: 1000
slot_uri: skos:prefLabel
alias: display_name
owner: JournalArticle
domain_of:
- CurationAid
range: string
recommended: true
identifiers:
name: identifiers
description: An unambiguous reference to the subject within a given context.
from_schema: https://concepts.inm7.de/s/simpleinput/unreleased
exact_mappings:
- dcterms:identifier
- schema:identifier
- ADMS:identifier
rank: 1000
slot_uri: dlidentifiers:identifier
alias: identifiers
owner: JournalArticle
domain_of:
- CurationAid
range: Identifier
multivalued: true
inlined: true
inlined_as_list: true
pid:
name: pid
annotations:
sh:order:
tag: sh:order
value: 1
description: Persistent and globally unique identifier of a `Thing`.
title: Persistent identifier
from_schema: https://concepts.inm7.de/s/simpleinput/unreleased
exact_mappings:
- dcterms:identifier
- schema:identifier
- ADMS:identifier
rank: 1000
slot_uri: dlthings:pid
identifier: true
alias: pid
owner: JournalArticle
domain_of:
- Thing
range: uriorcurie
required: true
relations:
name: relations
annotations:
sh:order:
tag: sh:order
value: 6
description: Declares an unqualified relation of the subject `Thing` to another
`Thing`. This schema slot is used to define related things inline. If such a
definition is not needed. A qualified relationship can be declared directly
using the `characterized_by` slot.
title: Relations
from_schema: https://concepts.inm7.de/s/simpleinput/unreleased
exact_mappings:
- dcat:relation
- dcterms:relation
rank: 1000
domain: Thing
slot_uri: dlthings:relation
alias: relations
owner: JournalArticle
domain_of:
- Thing
symmetric: true
relational_role: OBJECT
range: Thing
multivalued: true
inlined: true
inlined_as_list: false
annotations:
name: annotations
annotations:
sh:order:
tag: sh:order
value: 5
description: A record of properties of the metadata record on a subject, a collection
of tag/text tuples with the semantics of OWL Annotation.
title: Annotations
from_schema: https://concepts.inm7.de/s/simpleinput/unreleased
exact_mappings:
- obo:NCIT_C44272
rank: 1000
slot_uri: dlthings:annotations
alias: annotations
owner: JournalArticle
domain_of:
- ThingMixin
range: Annotation
multivalued: true
inlined: true
broad_mappings:
name: broad_mappings
annotations:
sh:order:
tag: sh:order
value: 9
description: A list of terms from different schemas or terminology systems that
have broader meaning.
title: Broad mappings
from_schema: https://concepts.inm7.de/s/simpleinput/unreleased
rank: 1000
is_a: mappings
slot_uri: skos:broadMatch
alias: broad_mappings
owner: JournalArticle
domain_of:
- ThingMixin
range: uriorcurie
multivalued: true
close_mappings:
name: close_mappings
annotations:
sh:order:
tag: sh:order
value: 8
description: A list of terms from different schemas or terminology systems that
have close meaning.
title: Close mappings
from_schema: https://concepts.inm7.de/s/simpleinput/unreleased
rank: 1000
is_a: mappings
slot_uri: skos:closeMatch
alias: close_mappings
owner: JournalArticle
domain_of:
- ThingMixin
range: uriorcurie
multivalued: true
description:
name: description
annotations:
sh:order:
tag: sh:order
value: 4
description: A free-text account of the subject.
title: Description
from_schema: https://concepts.inm7.de/s/simpleinput/unreleased
exact_mappings:
- dcterms:description
- rdfs:comment
broad_mappings:
- obo:IAO_0000300
rank: 1000
slot_uri: dlthings:description
alias: description
owner: JournalArticle
domain_of:
- Project
- ThingMixin
range: string
exact_mappings:
name: exact_mappings
annotations:
sh:order:
tag: sh:order
value: 7
description: A list of terms from different schemas or terminology systems that
have identical meaning.
title: Exact mappings
from_schema: https://concepts.inm7.de/s/simpleinput/unreleased
rank: 1000
is_a: mappings
slot_uri: skos:exactMatch
alias: exact_mappings
owner: JournalArticle
domain_of:
- ThingMixin
range: uriorcurie
multivalued: true
attributes:
name: attributes
annotations:
sh:order:
tag: sh:order
value: 3
description: Declares a relation that associates a `Thing` (or another attribute)
with an attribute, where an attribute is an intrinsic characteristic, such as
a quality, capability, disposition, function, or is an externally derived attribute
determined from some descriptor (e.g. a quantity, position, label/identifier).
Technically, this declaration is done via an `AttributeSpecification` that combines
a `predicate` with a value declaration and the attribute-related slots of a
`Thing`. Importantly, such attributes are declared inline, because they do not
have a unique identifier. If an identifier is available, a `Thing` declaration
(see `relation`), and a qualification of that relationship via a `Statement`
(see `characterized_by`) should be preferred.
title: Attributes
from_schema: https://concepts.inm7.de/s/simpleinput/unreleased
exact_mappings:
- sio:SIO_000008
rank: 1000
slot_uri: dlthings:attributes
alias: attributes
owner: JournalArticle
domain_of:
- ThingMixin
range: AttributeSpecification
multivalued: true
inlined: true
inlined_as_list: true
characterized_by:
name: characterized_by
annotations:
sh:order:
tag: sh:order
value: 2
description: Qualifies relationships between a subject `Thing` and an object `Thing`
with a `Statement` declaring a `predicate` on the nature of the relationship.
title: Is characterized by
from_schema: https://concepts.inm7.de/s/simpleinput/unreleased
exact_mappings:
- obo:RO_0000053
rank: 1000
slot_uri: dlthings:characterized_by
alias: characterized_by
owner: JournalArticle
domain_of:
- ThingMixin
range: Statement
multivalued: true
inlined: true
inlined_as_list: true
narrow_mappings:
name: narrow_mappings
annotations:
sh:order:
tag: sh:order
value: 10
description: A list of terms from different schemas or terminology systems that
have narrower meaning.
title: Narrow mappings
from_schema: https://concepts.inm7.de/s/simpleinput/unreleased
rank: 1000
is_a: mappings
slot_uri: skos:narrowMatch
alias: narrow_mappings
owner: JournalArticle
domain_of:
- ThingMixin
range: uriorcurie
multivalued: true
related_mappings:
name: related_mappings
annotations:
sh:order:
tag: sh:order
value: 11
description: A list of terms from different schemas or terminology systems that
have related meaning.
title: Related mappings
from_schema: https://concepts.inm7.de/s/simpleinput/unreleased
rank: 1000
is_a: mappings
slot_uri: skos:relatedMatch
alias: related_mappings
owner: JournalArticle
domain_of:
- ThingMixin
range: uriorcurie
multivalued: true
schema_type:
name: schema_type
description: State that the subject is an instance of a particular schema class.
Typically, no explicit value needs to be assigned to this slot, because it matches
the class type of a particular record. However, this slots can be used as a
type designator of a schema element for validation and schema structure handling
purposes. This is used to indicate specialized schema classes for properties
that accept a hierarchy of classes as their range.
from_schema: https://concepts.inm7.de/s/simpleinput/unreleased
exact_mappings:
- dcterms:type
rank: 1000
slot_uri: rdf:type
designates_type: true
alias: schema_type
owner: JournalArticle
domain_of:
- ThingMixin
- Identifier
range: NodeUriOrCurie
class_uri: inm7si:JournalArticle